Looking at your trajectory¶
Fig. 50 The window of gmx view showing a box of water.
Before analyzing your trajectory it is often informative to look at
your trajectory first. GROMACS comes with a simple trajectory viewer
gmx view; the advantage
with this one is that it does not require OpenGL, which usually isn’t
present on e.g. supercomputers. It is also possible to generate a
hard-copy in Encapsulated Postscript format (see
Fig. 50). If you want a faster and more
fancy viewer there are several programs that can read the GROMACS
trajectory formats – have a look at our webpage for updated links.